A data analysis pipeline for shotgun mass-spectrometry proteomics.
Open source and targeted at the needs of academic core facilities.
Please Login to CPFP to analyze data or view results.
Development of CPFP at the University of Oxford and UT Southwestern Medical Center has been funded by: John Fell OUP Research Fund, Edward Penley Abraham Fund, European Research Council FP7 (233240), Cancer Research & Prevention Institute of Texas (RP120613 / R1121).
CPFP incorporates open-source software including the Trans-Proteomic Pipeline (TPP), OMSSA, X!Tandem.
CPFP version 2.1.2 @ cpfp (cpfp-master.molbiol.ox.ac.uk)
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CPFP is built on the ISB Trans-Proteomic Pipeline, GPM X!Tandem, and NCBI OMSSA.